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Latest News

SEP '24 Gheetika's Nature Communications paper published

Identification of an embryonic differentiation stage marked by Sox1 and FoxA2 co-expression using combined cell tracking and high dimensional protein imaging

08.09.2024

SEP '24 Ready for the 3rd decade

On 1 September 2004, Timm started his independent group in Munich, Germany, which is now the ETH BSSE’s Cell Systems Dynamics group

01.09.2024

AUG '24 Daniel's PLOS Computational Biology paper published

aiSEGcell: user-friendly deep learning-based segmentation of nuclei in transmitted light images

08.08.2024

Selected Publications

Hoppe PS, Schwarzfischer M, Loeffler D, Kokkaliaris KD, Hilsenbeck O, Moritz N, Endele M, Filipczyk A, Gambardella A, Ahmed N, Etzrodt M, Coutu DL, Rieger MA, Marr C, Strasser M, Schauberger B, Burtscher I, Ermakova O, Bürger A, Lickert H, Nerlov C, Theis FJ and Schroeder T (2016)
Early myeloid lineage choice is not initiated by random PU.1 to GATA1 protein ratios
Nature, 535: 299-302

Hilsenbeck O*, Schwarzfischer M*, Skylaki S*, Schauberger B, Hoppe PS, Loeffler D, Kokkaliaris KD, Hastreiter S, Skylaki E, Filipczyk A, Strasser M, Buggenthin F, Feigelman JS, Krumsiek J, van den Berg AJJ, Endele M, Etzrodt M, Marr C, Theis FJ* and Schroeder T* (2016)
Software tools for single-cell tracking and quantification of cellular and molecular properties
Nature Biotechnology, 34: 703-706

Filipczyk A, Marr C, Hastreiter S, Feigelman J, Schwarzfischer M, Hoppe PS, Loeffler D, Kokkaliaris KD, Endele M, Schauberger B, Hilsenbeck O, Skylaki S, Hasenauer J, Anastassiadis K, Theis FJ and Schroeder T (2015)
Network plasticity of pluripotency transcription factors in embryonic stem cells
Nature Cell Biology, 17: 1235-1246

Eilken HM, Nishikawa SI and Schroeder T (2009)
Continuous single-cell imaging of blood generation from haemogenic endothelium
Nature, 457: 896 - 900

Rieger MA, Hoppe PS, Smejkal BM, Eitelhuber AC and Schroeder T (2009)
Hematopoietic cytokines can instruct lineage choice
Science, 325: 217 - 218

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Open Positions

CSD open positions

Contact

Prof. Dr. Timm Schroeder

Full Professor at the Department of Biosystems Science and Engineering

Professur f. Zellsystem-Dynamik
Klingelbergstrasse 48
4056 Basel
Switzerland