XiT

 

Instructions

Download a short guide how to use XiT:

Download A guide to XiT (PDF, 817 KB)
[alternative download link]

XiT

Download Windows installer:

Download XiT Installer Win (EXE, 6.9 MB)

Datasets

Download Example Dataset Statistics (ZIP, 3.3 MB)
[alternative download link]

Download Example Dataset Workspace (MAT, 14.8 MB)
[alternative download link]

Download Example Dataset XiT Format (XLSX, 5.4 MB)
[alternative download link]

Channels in the datasets correspond to:

Channel 1: c-Kit
Channel 2: Collagen I
Channel 3: Lineage
Channel 4: Distance to Collagen I

Source Code

Download XiT - Matlab 2016_18 Imaris 9 (ZIP, 273 KB)

Download XiT - Matlab 2016 (ZIP, 303 KB)
[alternative download link]

Download XiT - Matlab 2014-2015 (ZIP, 303 KB)
[alternative download link]

References

If you use XiT for your research, please cite the following paper:

Coutu DL* / **, Kokkaliaris KD*, Kunz L* and Schroeder T** (2018)
Multicolor quantitative confocal imaging cytometry
Nature Methods, 15: 39–46

License

XiT is free software: you can redistribute it and/or modify it under the terms of the 3-Clause BSD License.

This software is provided by the copyright holders and contributors “AS IS” and any EXPRESS or IMPLIED WARRANTIES, including, but not limited to, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. See the BSD-3-License for more details(external page https://opensource.org/licenses/BSD-3-Clause).