Preprints

V. Palacio, A. Pancho, A. Morabito, J. Malkmus, Z. He, G. Soussi, R. Zeller, B. Treutlein and A. Zuniga
Single-cell profiling of penta- and tetradactyl mouse limb buds identifies mesenchymal progenitors controlling digit numbers and identities
bioRxiv, DOI: https://doi.org/10.1101/2024.06.03.597099 (2024). external page article
 

F. Sanchis-Calleja, A. Jain, Z. He, R. Okamoto, C. Rusimbi, P. Rifes, G. S. Rathore, M. Santel, J. Janssens, M. Seimiya, J. S. Fleck, A. Kirkeby, J. G. Camp and B. Treutlein
Decoding morphogen patterning of human neural organoids with a multiplexed single-cell transcriptomic screen
bioRxiv, DOI: https://doi.org/10.1101/2024.02.08.579413 (2024). external page article
 

H. Lin, J. Janssens, A. Kroell, P. Hornauer, M. Santel, R. Okamoto, K. Karava, M. Priouret, M. P. Garcia, M. Schroeter, J. G. Camp and B. Treutlein
Human neuron subtype programming through combinatorial patterning with scRNA-seq readouts
bioRxiv, DOI: https://doi.org/10.1101/2023.12.12.571318 (2023). external page article
 

F. Zenk, J. S. Fleck, S. M. J. Jansen, B. Kashanian, B. Eisinger, M. Santel, J. Dupre, J. G. Camp and B. Treutlein
Single-cell epigenomic reconstruction of developmental trajectories in human neural organoid systems from pluripotency
bioRxiv, DOI: https://doi.org/10.1101/2023.09.12.557341 (2023). external page article
 

Z. He, L. Dony, J. S. Fleck, A. Szalata, K. X. Li, I. Slišković, H. Lin, M. Santel, A. Atamian, G. Quadrato, J. Sun, S. P. Paşca, J. G. Camp, F. Theis and B. Treutlein
An integrated transcriptomic cell atlas of human neural organoids
bioRxiv, DOI: https://doi.org/10.1101/2023.10.05.561097 (2023). external page article

Q. Zu, L. Halle, S/ Hediyeh-zadeh, M. Kuijs, U. Kilik, Q. Yu, T. Frum, L. Adam, S. Parikh, M. Gander, R. Kfuri-Rubens, D. Klein, Z. He, J. S. Fleck, K. Oost, M. Kahnwald, S. Barbiero, O. Mitrofanova, G. Maciag, K. B. Jensen, M. Lutolf, P. Liberali, J. Beumer, J. R. Spence, B. Treutlei, F. J. Theis and J. G. Camp
An integrated transcriptomic cell atlas of human endoderm-derived organoids
bioRxiv, DOI: https://doi.org/10.1101/2023.11.20.567825 (2023). external page article

A. Jain, G. Gut, F. S. Calleja, R. Okamoto, S. Streib, Z. He, F. Zenk, M. Santel, M. Seimiya, R. Holtackers, S. M.J. Jansen, J. G. Camp and B. Treutlein
Morphodynamics of human early brain organoid development
bioRxiv, DOI: https://doi.org/10.1101/2023.08.21.553827 (2023). external page article

J. D. Blair, A. Hartman, F. Zenk, C. Dalgarno, B. Treutlein and R. Satja
Phospho-seq: Integrated, multi-modal profiling of intracellular protein dynamics in single cells
bioRxiv, DOI: https://doi.org/10.1101/2023.03.27.534442 (2023). external page article

M. T. Nikolova, Z. He, R. A. Wimmer, M. Seimiya, J. M. Nikoloff, J. M. Penninger, J. G. Camp and B. Treutlein
Fate and state transitions during human blood vessel organoid development
bioRxiv, DOI: https://doi.org/10.1101/2022.03.23.485329 (2022).external page article

R. Okuda, B. Gjeta, D. Popovic, A. Maynard, Q. Yu, Z. He, M. Santel, M. Seimiya, S. Morinaga, Y. Miyagi, T. Yamaguchi, Y. Ueno, H. Taniguchi,  B. Treutlein and J. G. Camp
Reconstructing cell interactions and state trajectories in pancreatic cancer stromal tumoroids
bioRxiv, DOI: https://doi.org/10.1101/2022.02.14.480334 (2022).external page article