2024

We're thrilled to announce the release of V-pipe 3.0! This computational pipeline is specifically crafted for analyzing short viral genomes using next-generation sequencing data. V-pipe 3.0 enables sustainable viral genomic data science. You can check out the published paper on our work in GigaScience at: https://doi.org/10.1093/gigascience/giae065

Our paper ‘Assessing different next-generation sequencing technologies for wastewater-based epidemiology’, is now published in Water Research. In this paper we identified tradeoffs in terms of cost, timeliness, and accuracy of wastewater pathogen tracking between different NGS technologies: https://www.sciencedirect.com/science/article/pii/S0043135424013642?via%3Dihub.

Our review on genomic reproducibility in the bioinformatics era has been published in Genome Biology. The paper provides a comprehensive analysis of how computational methods influence the consistency and accuracy of genomic results, compiling methodologies and datasets for better evaluation of genomic reproducibility.

The V-pipe dev team is proud to be attributed a Google Season of Docs grant, and is happy to announce the partnership with van Geest Consultancy [http://vangeestconsultancy.com] for our tutorials writing project [https://gist.github.com/DrYak/ed38215519683ccd5c4657760050add7].