VILOCA: sequencing quality-aware viral haplotype reconstruction and mutation calling for short-read and long-read data

We are excited to share that our new tool VILOCA has been published! VILOCA is a novel method for mutation calling and local haplotype reconstruction from diverse viral short-read and long-read sequencing data. It has already proven to be useful in various settings, including classical mutation calling for single or longitudinal samples, and viral surveillance in wastewater. You can check out our published paper in NAR Genomics and Bioinformatics: https://doi.org/10.1093/nargab/lqae152