Computational Methods
We develop computational methods for the modeling and simulation of signalling networks, cell-based tissue simulations, image processing and image-based modelling.
Cell-based Tissue Simulation Framework
We have developed LBIBCell, PolyHoop and SimuCell3D (all C++-based) to simulate tissue development in 2D and 3D at cellular resolution.
SimuCell3D: 3D Simulation of Tissue Mechanics with Cell Polarization
Steve Runser, Roman Vetter, and Dagmar Iber
external page Nature Computational Science (2024), external page News & Views, external page Tweetorial
PolyHoop: Soft particle and tissue dynamics with topological transitions.
Roman Vetter, Steve Runser, and Dagmar Iber
external page Computer Physics Communications (2024), external page Tweetorial
LBIBCell: A Cell-Based Simulation Environment for Morphogenetic Problems.
Tanaka S, Sichau D, Iber D, external page Bioinformatics, 2015.
external page Documentation; external page Download
