SConES
Summary
SConES is a network-guided multi-locus association mapping methods. It allows for the discovery genetic loci that are maximally associated with a phenotype, and tend to be connected on an underlying network. This network can be constructed from a gene-gene interaction network (based on proximity), or in any way such that you believe that neighboring SNPs should tend to be selected together. Download (ZIP, 350 KB)
Code
Matlab code can be downloaded here: Download SConES code (ZIP, 350 KB)
Publication
Efficient network-guided multi-locus association mapping with graph cuts
Chloé-Agathe Azencott, Dominik G. Grimm, Mahito Sugiyama, Yoshinobu Kawahara and Karsten Borgwardt
ISMB 2013 and Bioinformatics 2013, 29 (13): i171-i179
external page Online | ETH Research Collection | Project page including code