Personalized Swiss Sepsis Study

The Personalized Swiss Sepsis Study is a SPHN/PHRT driver project with the goal to build an interoperable infrastructure among the intensive care units of the Swiss university hospitals and several research groups, to gather complex information on the host and pathogen during the entire course of a sepsis. The integration of continuous monitoring data from intensive care units will result in digital biomarkers. Combined with the molecular data from bacterial pathogens (metagenomics and whole genome sequencing) and from the host (metabolomics, immunophenotyping, genotyping), new avenues for sepsis research will emerge. These very comprehensive and complex data will be combined via the SPHN data hubs to enable multi-dimensional analyses through machine learning. The goal is to recognize a bacterial sepsis earlier and to predict its course more precisely than currently possible for an individual patient.

Coordinators

Karsten Borgwardt (ETH Zürich)
Adrian Egli (University Hospital Basel)

Collaborators

Publications

SPHN/PHRT: Forming a Swiss-Wide Infrastructure for Data-Driven Sepsis Research

Adrian Egli, Manuel Battegay, Andrea C Büchler, Peter Bühlmann, Thierry Calandra, Philippe Eckert, Hansjakob Furrer, Gilbert Greub, Stephan M Jakob, Laurent Kaiser, Stephen L Leib, Stephan Marsch, Nicolai Meinshausen, Jean-Luc Pagani, Jerome Pugin, Gunnar Rätsch, Jacques Schrenzel, Reto Schüpbach, Martin Siegemund, Nicola Zamboni, Reinhard Zbinden, Annelies Zinkernagel, and Karsten Borgwardt
Studies in Health Technology and Informatics 2020, 270: 1163–1167
external pageOnline   

Early Recognition of Sepsis with Gaussian Process Temporal Convolutional Networks and Dynamic Time Warping

Michael Moor, Max Horn, Bastian Rieck, Damian Roqueiro and Karsten Borgwardt
Machine Learning for Healthcare Conference (MLHC) 2019 and Proceedings of Machine Learning Research 106:2–26, 2019
external pageOnline  |  external pageGitHub  |  ETH Research Collection

This project is supported by the grant #2017‐110 of the Strategic Focal Area external pagePersonalized Health and Related Technologies (PHRT) of the ETH Domain and the external pageSwiss Personalized Health Network (SPHN) (2017DRI20).

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