graphkernels: R and Python packages for graph comparison

Mahito Sugiyama, Elisabetta Ghisu, Felipe Llinares-Lopez, Karsten Borgwardt

Enlarged view: Cover page of OUP Bioinformatics Journal

graphkernels: R and Python packages for graph comparison  

Summary

R and Python packages for computing graph kernels, which include:

  • simple kernels between vertex and/or edge label histograms
  • random walk kernels (popular baselines)
  • Weisfeiler-Lehman graph kernel (state-of-the-art)
  • Shortest-Path kernel
  • graphlet kernel

Code

R

Python

Reference

graphkernels: R and Python packages for graph comparison

Mahito Sugiyama, Elisabetta Ghisu, Felipe Llinares-Lopez, Karsten Borgwardt
Bioinformatics 2018, 34 (3): 530-532
external pageOnline  |  ETH Reserach Collection  |  Project page

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