graphkernels: R and Python packages for graph comparison
Summary
R and Python packages for computing graph kernels, which include:
- simple kernels between vertex and/or edge label histograms
- random walk kernels (popular baselines)
- Weisfeiler-Lehman graph kernel (state-of-the-art)
- Shortest-Path kernel
- graphlet kernel
Code
R
Python
Reference
graphkernels: R and Python packages for graph comparison
Mahito Sugiyama, Elisabetta Ghisu, Felipe Llinares-Lopez, Karsten Borgwardt
Bioinformatics 2018, 34 (3): 530-532
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