New light microscope for highest precision in single-molecule localisation and tracking

A new super-resolution microscope and first of its kind in Switzerland, the MINFLUX microscope, is now installed at the Single Cell Facility (SCF). Based on single-molecule localisation, this high-precision microscope is now operational and available for all users of the SCF.

The new .

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MINFLUX at the Single Cell Facility at the D-BSSE, ETH Zurich (Photo: Thomas Horn).

A limited photon budget, together with sample drift, are the main factors that prevent other nanoscopy techniques from reaching their theoretical potential. Like other single molecule localisation techniques, such as STORM/PALM, MINFLUX takes advantage of the on-off transition of fluorescent molecules to separate the emission of densely packed emitters over time. Unlike the aforementioned camera-based techniques, MINFLUX follows a hybrid coordinate-targeted/stochastic approach: localisation of each individual fluorophore is achieved by “injecting” a reference coordinate in the sample in the form of a local excitation minimum, a strategy derived from Stimulated Emission Depletion (STED) microscopy. The superior photon efficiency of the MINFLUX technology, being 20 times higher than camera-based techniques, in combination with its very effective active sample stabilisation system, are responsible for its unprecedented localisation precision.  

Enlarged view: 3D images taken by Minflux at D-BSSE
3D MINFLUX measurement of nuclear pore complexes. Diffraction-limited confocal images showing an entire nucleus (A) and individual nuclear pore complexes (B). 3D reconstruction of the MINFLUX measurement a single nuclear pore complex in top (C) and side-view (D), colour coding represents the z coordinate of the localisations. Localisation precision for x, y and z axis is approx. 6nm. Images: Javier Casares Arias

SCF users with projects that may benefit from this technology can contact the SCF staff for support at .

Learn about the Single Cell Facility.

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